Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs9346594 chr6:169328519 C/T 0.000153 490 31.23 31.27 27.35 KM Plot
PRAD rs9348747 chr6:27002406 C/T 4.97E-5 494 26.37 32.4 30.53 KM Plot
PRAD rs9355028 chr6:169326701 C/T 0.000118 491 30.73 31.37 27.03 KM Plot
PRAD rs9355090 chr6:169193833 G/A 0.000132 489 28.8 31.87 29.95 KM Plot
PRAD rs9364188 chr6:169326720 G/A 0.000117 492 30.73 31.4 27.03 KM Plot
PRAD rs9364323 chr6:169309754 G/A 3.86E-6 493 30.8 31.27 31.87 KM Plot
PRAD rs9366679 chr6:26992381 A/G 4.96E-5 494 30.73 31.43 26.92 KM Plot
PRAD rs9369412 chr6:43389243 T/C 6.5E-12 479 44.3 30.38 31.18 KM Plot
PRAD rs9378361 chr6:3311734 C/T 0.000154 494 28.32 28.4 31.38 KM Plot
PRAD rs9379949 chr6:26960660 T/C 5.22E-5 493 30.75 31.43 26.92 KM Plot
PRAD rs9392479 chr6:3311492 A/C 9.48E-6 492 31.33 28.77 29.17 KM Plot
PRAD rs9392480 chr6:3312220 C/T 0.000155 494 31.25 28.97 28.32 KM Plot
PRAD rs9392531 chr6:3863025 C/T 7.03E-8 473 31.93 29.32 23.08 KM Plot
PRAD rs9409160 chr9:118227046 G/A 0 491 15.03 31.27 30.97 KM Plot
PRAD rs9455635 chr6:168121550 G/A 3.1E-8 482 31.27 28.07 35.58 KM Plot